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Examples Overview

Use these examples as entry points for correctness checks, scalability experiments, and real-world genotype screening runs.

  • Tiny correctness: Validate federated QC, relatedness screening, and association screening against a centralized baseline using synthetic tiny PLINK data with 500 samples and 5,000 SNPs.
  • Performance small: Measure runtime and memory at small scale using synthetic small PLINK data with 2,000 samples and 20,000 SNPs.
  • 1000 Genomes: Run the application workflow on prepared 1000 Genomes chr22 genotypes with generated phenotypes.
  • Three-node deployment: Run a server plus two clients with either script deployment (cluster_deployment/) or the CLI (fedgwas-deploy).